v2023
Contents:
Data Collection
TCGA
PCAWG
cBioPortal
Hartwig Medical Foundation
ICGC
St. Jude
PedcBioPortal
TARGET
Beat AML
CGCI
CPTAC
Literature
Preprocessing
Methods for cancer driver gene identification
dNdScv
OncodriveFML
OncodriveCLUSTL
cBaSE
Mutpanning
HotMaps3D
smRegions
Combining the outputs of driver identification methods
Rationale
Weight Estimation by Voting
Ranking Score
Optimization with constraints
Estimation of combined p-values using weighted Stouffer Z-score
Tiers of driver genes from sorted list of combined rankings and p-values
Combination benchmark
Datasets for evaluation
Metrics for evaluation
Comparison with individual methods
Leave-one-out combination
Comparison with other combinatorial selection methods
Drivers postprocessing
Classification according to MSKCC oncotree
Mode of action of driver genes
BoostDM Connection
DriverSaturation
Filter MNVs
Repository of mutational features
Linear clusters
3D clusters
Pfam Domains
Excess of mutations
Mode of action
Installation
Usage
Input & output
Input
Output
IntOGen
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Welcome to IntOGen’s documentation
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Welcome to IntOGen’s documentation
¶
Contents:
Data Collection
TCGA
PCAWG
cBioPortal
Hartwig Medical Foundation
ICGC
St. Jude
PedcBioPortal
TARGET
Beat AML
CGCI
CPTAC
Literature
Preprocessing
Methods for cancer driver gene identification
dNdScv
OncodriveFML
OncodriveCLUSTL
cBaSE
Mutpanning
HotMaps3D
smRegions
Combining the outputs of driver identification methods
Rationale
Weight Estimation by Voting
Ranking Score
Optimization with constraints
Estimation of combined p-values using weighted Stouffer Z-score
Tiers of driver genes from sorted list of combined rankings and p-values
Combination benchmark
Drivers postprocessing
Classification according to MSKCC oncotree
Mode of action of driver genes
BoostDM Connection
DriverSaturation
Filter MNVs
Repository of mutational features
Linear clusters
3D clusters
Pfam Domains
Excess of mutations
Mode of action
Installation
Usage
Input & output
Indices and tables
¶
Index
Module Index
Search Page
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